Package: pedSimulate 1.4.3
Mohammad Ali Nilforooshan
pedSimulate: Pedigree, Genetic Merit, Phenotype, and Genotype Simulation
Simulate pedigree, genetic merits and phenotypes with random/non-random matings followed by random/non-random selection with different intensities and patterns in males and females. Genotypes can be simulated for a given pedigree, or an appended pedigree to an existing pedigree with genotypes. Mrode, R. A. (2005) <ISBN:9780851989969, 0851989969>; Nilforooshan, M.A. (2022) <doi:10.37496/rbz5120210131>.
Authors:
pedSimulate_1.4.3.tar.gz
pedSimulate_1.4.3.zip(r-4.5)pedSimulate_1.4.3.zip(r-4.4)pedSimulate_1.4.3.zip(r-4.3)
pedSimulate_1.4.3.tgz(r-4.4-any)pedSimulate_1.4.3.tgz(r-4.3-any)
pedSimulate_1.4.3.tar.gz(r-4.5-noble)pedSimulate_1.4.3.tar.gz(r-4.4-noble)
pedSimulate_1.4.3.tgz(r-4.4-emscripten)pedSimulate_1.4.3.tgz(r-4.3-emscripten)
pedSimulate.pdf |pedSimulate.html✨
pedSimulate/json (API)
NEWS
| # Install 'pedSimulate' in R: |
| install.packages('pedSimulate', repos = c('https://nilforooshan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nilforooshan/pedsimulate/issues
Last updated 1 days agofrom:f27cba23bf. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-win | NOTE | Sep 17 2024 |
| R-4.5-linux | NOTE | Sep 17 2024 |
| R-4.4-win | NOTE | Sep 17 2024 |
| R-4.4-mac | NOTE | Sep 17 2024 |
| R-4.3-win | NOTE | Sep 17 2024 |
| R-4.3-mac | NOTE | Sep 17 2024 |
Exports:appendGenappendPedfs_mate_finderhs_mate_finderpp_mate_findersimulateGensimulatePed
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Pedigree, genetic merit, phenotype, and genotype simulation | pedSimulate-package |
| Simulate genotypes for an appended pedigree | appendGen |
| Simulate new generations from an existing pedigree | appendPed |
| Find fullsib mates | fs_mate_finder |
| Find halfsib mates | hs_mate_finder |
| Find parent-progeny mates | pp_mate_finder |
| Simulate genotypes | simulateGen |
| Simulate pedigree, genetic merits and phenotypes | simulatePed |